Name: Valentyn Bezshapkin
Type: User
Company: Sunagawa Lab @ ETH Zürich
Bio: MD, PhD student in Bioinformatics. Studying massive genomic datasets and producing software to do it better.
Twitter: valentynbez
Location: Zürich, Switzerland
Valentyn Bezshapkin's Projects
Annotated data.
An analysis and visualization platform for 'omics data
The anvi'o community web page
"Automate the Boring Stuff" Practice Tasks Solutions
🔬 A curated list of awesome LLMs & deep learning strategies & tools in financial market.
Conda recipes for the bioconda channel.
BlackJAX is a sampling library designed for ease of use, speed and modularity.
CAMDA 2021 winning solution for "Literature AI for Drug Induced Liver Injury" challenge
The Data Engineering Cookbook
Data and code behind the articles and graphics at FiveThirtyEight
A curated collection of data science relevant talks, due to the lack of more specific term :)
Deblur is a greedy deconvolution algorithm based on known read error profiles.
Deep functional residue identification
Python package built to ease deep learning on graph, on top of existing DL frameworks.
Rapid comparison and dereplication of genomes
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks
Archive for Kaggle competitions.
An intuitive library to plot evaluation metrics.
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
Port of Facebook's LLaMA model in C/C++
Archive for my math self-education
WDL Workflow for metagenome assembly
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
MetaSNV, a metagenomic SNV calling pipeline.
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent