Comments (1)
Also after reading the paper and training used I wonder why did you need to train the ViT encoder for the CellFinder model. Weren't the SAM ViT feature maps good enough to feed them to the decoder?
Have you tried with SAM-h?
Maybe the need to retrain it is because SAM-b feature maps are not good enough. This is where EfficientSAM or EfficientViTSAM are interesting, because their performance is quite good compared even to SAM-h, so maybe their ViT encoder can be frozen during the CellFinder step.
Sorry if any of these questions are stupid.
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Related Issues (13)
- Getting started... HOT 2
- Add option to pass bounding boxes to process_and_segment_image
- Most pre-processing functions and process_and_segment_image expect 3 dimensions, but percentile_threshold seems to expect 4
- napari plugin? HOT 2
- Package name
- `segment_cellular_images` should always return the same output type
- Discussion: mask dtype
- Model training script of CellSAM HOT 3
- How to convert ground truth cell masks into bounding boxes HOT 1
- Error 'numpy.ndarray' object has no attribute 'unsqueeze' when passing bounding boxes into segment_cellular_image
- Color flag in label layer creation in widget initiation for napari plugin is deprecated
- CellFinder training
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