Vivek Appadurai's Projects
Advent of code 2023
Solved CodeEval challenges
Solutions to Octave Exercises from Stanford's Machine Learning Course on Coursera
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
Pipeline to perform finemapping of GWAS results from SAIGE mixed linear model analysis using PolyFun, SuSiE and FINEMAP
Code and coursework for the Functional Programming in Scala course from EPFL offered through Coursera
LD Hub pipeline using an in house trait repository
Imputation pipeline using IMPUTE5
Code used for the paper, "Legacy data, whole genome imputation, and the analysis of Psychiatric traits: Lessons from the iPSYCH case-cohort study"
Pipeline to perform gene level analysis using MAGMA
An R package for creating ggplot2 based miami plots.
Working repository for development of a server to calculate risk scores
A cromwell/wdl pipeline for polygenic scoring using PRSice_v2.0
Jupyter Notebooks for the Python Data Science Handbook
A cromwell/wdl pipeline for polygenic scoring using sBayesR
Practice exercises using R shiny
SpringBoard Foundations of Data Science Workshop
Utility scripts and other one time use code
Config files for my GitHub profile.
Repository for a personal webpage
Analysis and plotting code for iPSYCH Cross Disorder 2 project