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  • šŸ‘‹ Hi, Iā€™m Vivek Appadurai (@vaqm2)
  • šŸ‘€ Iā€™m interested in bioinformatics libraries, packages, workflows and alternative models for genome wide associations studies.
  • šŸŒ± Iā€™m currently employed as a postdoc in statistical genetics with applications towards pscyhiatric genetics, risk scores and health metrics research.
  • šŸ“« [email protected]

Vivek Appadurai's Projects

custom_gwas icon custom_gwas

Python Code using CyVCF2 to run custom GWAS models on imputed VCF files

finemapping-pipeline icon finemapping-pipeline

Pipeline to perform finemapping of GWAS results from SAIGE mixed linear model analysis using PolyFun, SuSiE and FINEMAP

ibp_ld_hub icon ibp_ld_hub

LD Hub pipeline using an in house trait repository

impute_paper icon impute_paper

Code used for the paper, "Legacy data, whole genome imputation, and the analysis of Psychiatric traits: Lessons from the iPSYCH case-cohort study"

miamiplot icon miamiplot

An R package for creating ggplot2 based miami plots.

prsice-wdl icon prsice-wdl

A cromwell/wdl pipeline for polygenic scoring using PRSice_v2.0

sbayesr-wdl icon sbayesr-wdl

A cromwell/wdl pipeline for polygenic scoring using sBayesR

util icon util

Utility scripts and other one time use code

vaqm2 icon vaqm2

Config files for my GitHub profile.

xdx2 icon xdx2

Analysis and plotting code for iPSYCH Cross Disorder 2 project

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