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Matheus Viana's Projects

3dskell icon 3dskell

Skeletonization of 3D binary volumes

image2graph icon image2graph

Tool to perform graph-based segmentation tasks on images

loopfinder icon loopfinder

Loop Detection in Graphs via Brute Force Search

mitograph icon mitograph

Software for Quantifying Mitochondrial Content in Live Cells

mitograph_distance icon mitograph_distance

Measure the distances between 3D particle position and closest points of the vtk surface file

mitographgeo icon mitographgeo

Analysis of Spatial Organisation of Mitochondrial Networks

mitographtools icon mitographtools

ImageJ macros to help you prepare your data to use with MitoGraph and example dataset

mitomembranes icon mitomembranes

Generate 3D surface models for inner and outer membranes of mitochondria.

moco icon moco

Model Convolution for Mitochondrial Networks

seasonalsis icon seasonalsis

This routine implements a continuous time approach for SIS model that includes seasonality in the disease transmissibility.

ssdual icon ssdual

Generate a Dual Representation for a Given Spatially Embedded Graph

ssfiji icon ssfiji

Set of macros for image processing in Fiji

sstools icon sstools

Set of tools for working on 3D volumes.

widthmap icon widthmap

Calculate width of mitochondrial tubules and map the width over the respective skeleton and surface.

yeastrevolution icon yeastrevolution

Simple script to create a 3D revolution from a 2D object about its longest axis

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