visze Goto Github PK

annotation-simulation

Code to generate ontology annotated objects (e.g. HPO annotated patients)

attributedb

awesome_project

bamsampler

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

beautiful-jekyll

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

bih-cluster

BIH Cluster Wiki

bioconda-recipes

Conda recipes for the bioconda channel.

boqa

My fork of boqa

charite.github.io

Charité Computational Biology Website

cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows

cookiecutter-snakemake-wrappers

Cookiecutter template for snakemake wrappers.

cs-latex-styles

Style sheets (and some tgz/zip sources) from IEEE, Springer Verlag, ACM, and CLRS (the algorithms book)

denovotf

Calculating change in binding affinity for predicted TF binding sites as a result of de novo mutations in non-coding regions. Uses JASPAR database for TF binding prediction.

encode_utils

Tools that are useful to any ENCODE submitting group.

exome-simulator

Exome simulator to generate "synthetic" exomes and add the variant information to the original jsons

exomiser

A Tool to Annotate and Prioritize Exome Variants

exomiser-demo

Demo exomiser application

gitignore

A collection of useful .gitignore templates

hemdag

hemdag-1

HEMDAG — Hierarchical Ensemble Methods for Directed Acyclic Graphs

hemomips

Automated analysis and result reporting for targeted sequencing data

hypersmurf

Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

hypersmurf-tutorial

Tutorial how you can the hyperSMURF algorithm in your Java application

imbalanced-learn

Python module to perform under sampling and over sampling with various techniques.

jannovar

Java framework for annotating VCF files with gene/transcript-based annotations

jannovar_tutorial

Jannovar Tutorial Applications

jquery-ujs

Ruby on Rails unobtrusive scripting adapter for jQuery

knitr

A general-purpose tool for dynamic report generation in R

knitr-examples

a collection of knitr examples