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Veronica Llorens Rico's Projects

benchmark_microbiome_transformations icon benchmark_microbiome_transformations

Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"

covid19_respiratory_microbiome icon covid19_respiratory_microbiome

Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"

polyester icon polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

qmp icon qmp

Quantitative Microbiome Profiling

syntheticgutcommunity icon syntheticgutcommunity

Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"

wc2019 icon wc2019

Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school

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