Vladimir Mikryukov's Projects
adegenet: a R package for the multivariate analysis of genetic markers
ALDEx_bioc is the working directory for updating bioconductor
Analysis of amplicon sequencing data with synthetic spike-in standards
Shiny application to conduct heteroscedasticity consistent ANOVA (in Russian)
ATLAS - Three commands to start analysing your metagenome data
Config driven, easy backup cli for restic.
Protein multiple sequence alignment benchmark
Nextflow-based BLAST pipeline
:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.
Conda recipes for the bioconda channel.
A tool for the spatial analysis of diversity
Docker and Singularity images to run Biodiverse software
brms R package for Bayesian generalized non-linear multilevel models using Stan
R package to calculate and verify check digits
Scripts for analazing community data through coocurrence graphs.
Accurate sample inference from amplicon data with single nucleotide resolution
🎨 dadaist2 - Highway to R
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
distwiz - Sparse to full matrix converter
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
a take on ordination plots using ggplot2
:christmas_tree:Visualization and annotation of phylogenetic trees
Clustering tool for sparse matrices produced by USEARCH
The Global Soil Mycobiome consortium dataset
Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
Book on Julia for Data Science
Shiny application to check GLM robustness to influential observations