Comments (4)
VolkerH
commented on August 13, 2024
check for corrupt input file first
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VolkerH
commented on August 13, 2024
this appeared after initializing flowdec with real_domain_fft = True option and went away after I set this option to False again. Happens for padding mode 2367 and None. Haven't tested Log2 yet.
Looks like it might be a bug in flowdec.
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VolkerH
commented on August 13, 2024
did not appear with padding mode log2 and real_domain_fft
could real_domain_fft have different requirements for input shapes ?
from lattice_lightsheet_deskew_deconv.
VolkerH
commented on August 13, 2024
confirmed that shapes for real_domain_fft must be even.
This should be handled in flowdec hammerlab/flowdec#21
closing here
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Related Issues (20)
- Think about deployment for end-users HOT 1
- Real-Time deskew visualization HOT 15
- Add scale to processed tiffs HOT 1
- fixed camera background subtraction - clip at 0, allow negative ? Also include for PSF. HOT 1
- openCL error HOT 6
- Assertion error in tensorflow
- PSF management - lattice pattern in file name
- include gputools.deconv as deconvolution backend HOT 3
- Performance in batch mode HOT 5
- artefacts introduced by rotate to coverslip HOT 6
- Artefacts on RTX 2080 Ti HOT 1
- Architecture not well-suited for multiprocessing due to pickling limitations HOT 9
- Not enough GPU ram ... make a "slow" option HOT 12
- psf generation - change to two stage affine to avoid artefacts HOT 1
- reuse PSF
- Fail gracefully when out of GPU memory HOT 1
- psf z_galvo step extraction fails for 20190802 dataset HOT 1
- CPU version — ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' HOT 6
- Allow deskewing when no PSF is present
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