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Valentin Ruano Rubio's Projects

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

flgca icon flgca

R package for fragment-length and GC bias analysis in Illumina WGS data

gatk icon gatk

Official code repository for GATK versions 4 and up

gcadjust icon gcadjust

R module to adjust coverage depth bias due to differences in GC content across regions.

hadoop-bam icon hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

haplocheckcli icon haplocheckcli

If I have time will do a revamp of this repo so that is easier to the eyes of a Software Engineer.

jargon icon jargon

Collection of mathematical recipes transcribed into Java.

jbwt icon jbwt

BWT related tools in Java.

jgsl icon jgsl

Pure Java implementation of the GNU Scientific Library

lineratio icon lineratio

A small R module to calculate the ratio of two lines expressed as a set of points.

maltools icon maltools

Tools developed for managing Malaria genetic data.

tls icon tls

Total least squares R package

warp icon warp

WDL Analysis Research Pipelines

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