vsmalladi Goto Github PK
Name: Venkat Malladi
Type: User
Bio: Sr. Scientist Bioinformatics @microsoft. Previously @utsw-bicf, @ENCODE-DCC, @ucscGenomeBrowser, @Kraus-Lab
Location: Dallas, Texas
Venkat Malladi's Projects
3pseq_analysis
Scripts to analyze the 3P-Seq data
alexa-hackathon
alexa-skills-kit-js
SDK and example code for building voice-enabled skills for the Amazon Echo.
alexa-skills-kit-python
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
atac-seq-pipeline
ENCODE ATAC-seq pipeline
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
autouri
Recursive localization for various types of URIs
azure-benchmark-scripts
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure
azure-storage-azcopy
The new Azure Storage data transfer utility - AzCopy v10
brauhausjs
A beer recipe calculator for homebrewing on servers and in browsers
catalog
Made with Manubot catalog (please add your manuscript!!)
chipseqdb
ChipSeq workflow
configs
Config files used to define parameters specific to compute environments at different Institutions
containers-biohpc
Docker and Singularity for UTSW BioHPC
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cromwellonazure
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
croo
Cromwell output organizer
d3-pedigree-examples
Examples of how to create family pedigrees with D3
daw
encode_visualizations
Trial vizualizations of ENCODE data in track hubs
encoded
Metadata database for ENCODE project
exploratory-data-analysis-with-r
Assignments of the "Data Analysis with R" course from Udacity.com. Learning gglot2, tidyr and dplyr
ga4gh-starter-kit-wes
Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification
gpu-learning
grocap.tsshmm
Transcription Start Site HMM for GROcap data
hackalist.github.io
A list of upcoming hackathons from around the world.
hlatyping
Precision HLA typing from next-generation sequencing data
images
js-quantities
JavaScript library for quantity calculation and unit conversion
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