vswilliamson Goto Github PK

age_related_changes_mirna

expression in postmortem brains

bam2windows

Automatically exported from code.google.com/p/bam2windows

clinicaltrials.gov-crawler

http://clinicaltrial.gov web-crawler

codelist

domreps

doMreps is a wrapper to mreps. It search and count for Internal Tandem Duplication in fastQ file from NGS

elprep

elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.

excid

The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regions below an adjustable coverage threshold.

expressionqtl

detecting expression quantitative trait loci

funseq2

A flexible framework to annotate and prioritize cancer somatic mutations.

group

A collection of scripts and information pertaining to the research clusters maintained at VIPBG.

hgvs

HGVS variant name parsing and generation

imputepipe

Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting to plink format and filtering steps

independent-eqtls

Summer 2014 project for my work in the Montgomery Lab at the Stanford School of Medicine.

ionreportertoolkit

Scripts to interface with the Ion Reporter cloud platform and handle files on the Torrent Server.

machadmix

scripts to enable imputation using mach admix

metasv

MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

mutect

MuTect -- Accurate and sensitive cancer mutation detection

ngs-protocols

Scripts to run several protocols to processing and analyzing of Next-Generation Sequencing data

oncocnv

ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

phenotips

PhenoTips provides an easy-to-use Web interface and standardized database back-end for collecting clinical findings observed in patients with possible genetic disorders.

php-r

Provides ability to run R scripts from PHP

pipeliner

Evaluating the performance of bioinformatics’ pipelines for Next Generation re-Sequencing

qualitycontrolnotes

Notes for Spit for Science Group

robobrowser

s4sqc

Spit4Science QC and data cleaning

shiny-server

My personal Shiny server

snp_location

testing where SNP are in the humain genom

tripod

Interface to query individual variant function

ts

Torrent Suite

urlgrep

Automatically exported from code.google.com/p/urlgrep