condo create problems with samtools about deviate

[W-L]

Hi Lisa,
Thanks for getting in touch! This is something I have seen a few times before, especially on MacOS.
As far as I understand, this is because samtools has some trouble with missing links to the mentioned libcrypto library.

Here's what helped to solve this in the past:

• Make sure that openssl is installed system-wide
• then link the missing libraries manually

brew install openssl
[or]
conda install openssl

ln -s /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib /usr/local/lib/
ln -s /usr/local/opt/openssl/lib/libssl.1.0.0.dylib /usr/local/lib/

I hope this helps, please keep me updated!
Lukas

[LisaBlazek]

hello!
i tried to install openssl and this kinda worked, openssl was in my path but i could not locate the two missing libraries.
as an alternative i tried to install the program with pip and used it on you test data and this worked, i got the same pdf.
so i think i'm gonna close the ticket.
thank you for your fast reply and help!!!