wanyuac Goto Github PK
Name: Yu Wan 万宇
Type: User
Company: University of Liverpool
Bio: Bioinformatician working on antimicrobial resistance and molecular epidemiology
Twitter: wanyuac
Location: Liverpool, England
Blog: www.microbialsystems.cn
Yu Wan 万宇's Projects
all2vcf
Toolkit to convert the output of common variant calling programs to VCF
alleleclusterlocator
Locating co-localised alleles in contigs, extracting embedding genomic regions and clustering these sequences.
apdtools
Scripts for measurement and analysis of allelic physical distances in bacterial genomes (previously repository name: physDist)
ariba_toolkit
Scripts for ARIBA-based gene detection
assembly_toolkit
Scripts for de novo genome assembly
bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
binf_toolkit
Handy scripts for routine bioinformatic analysis
cgsnps
Acquisition and processing core-genome SNPs
enterobaseassemblydownloader
Python script for downloading assemblies from enterobase
genedetector
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
genemates
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
handyr
Handy functions for daily R programming
hugo-book
Hugo documentation theme as simple as plain book
mainroad
Responsive, simple, clean and content-focused Hugo theme based on the MH Magazine lite WordPress theme
nitrec
Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
pammaker
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
pipeline
Bioinformatics pipelines
readsimulator
Simulating paired-end short sequencing reads from circular and linear genomes
small_basic
Small Basic programs
spades-contig-graph
a tool for creating a FASTG contig graph from a SPAdes assembly
srst2_toolkit
Supplementary tools for SRST2 and later series
taxonomy_toolkit
Scripts facilitating taxonomical analysis
wanyuac.github.io
Automatic redirection to the blog
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