Name: Daniel McDonald
Type: User
Company: UCSD - Dept. of Pediatrics
Bio: Programmer analyst, Scientific Director (American Gut / Microsetta Initiative) | Knight Lab | UC San Diego Dept. Pediatrics
Twitter: mcdonadt
Location: San Diego, CA
Blog: http://wasade.github.io
american-gut
American Gut open-access data and IPython notebooks
american-gut-analyses
american-gut-web
The website for the American Gut Project participant portal
an-introduction-to-applied-bioinformatics
Interactive lessons in bioinformatics.
apd-core
Core repo for
ariadne
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
automated_testing
Automated testing system for development versions of QIIME, PyCogent, biom-format, and more.
bioconda-recipes
Conda recipes for the bioconda channel.
biom-format
The Biological Observation Matrix (BIOM) Format Project
biom-format-feedstock
A conda-smithy repository for biom-format.
bitarray
C bit array structs and methods
bloom-analyses
bowtie2
A fast and sensitive gapped read aligner
brokit
Application controllers for command line bioinformatics applications
click
Python composable command line utility
conda-recipes
conda recipes for bioinformatic tools like blast+, infernal, etc.
cpython
The Python programming language
daniel_mcdonald
ddw-content
deblur
Deblur is a greedy deconvolution algorithm based on known read error profiles.
deblur-manuscript
diamond
Accelerated BLAST compatible local sequence aligner.
docs
Source repository for https://docs.qiime2.org
dotfiles
Because everyone needs dotfiles
emp
Data, code and analysis results for the Earth Microbiome Project.
emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
empress
A fast and scalable phylogenetic tree viewer for microbiome data
ete
Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
events
Home of information about Maintainerati events.
evident
Elucidating sampling effort for microbial analysis studies
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
