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agilerl

Streamlining reinforcement learning with RLOps

apbs-pdb2pqr

A fork of https://github.com/Electrostatics/apbs-pdb2pqr

api-client

Teselagen api client

awesome-deep-learning-papers

The most cited deep learning papers

awesome-graph-transformer

Papers about graph transformers.

biopartsbuilder

BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts

cello

Genetic circuit design automation

dgx_researcher

Dockerfile for container with popular image processing libraries, ideally for NVIDIA DGX-1 Nodes. Good for WSI Medical Image Research. Can deploy Stylegan, Stylegan2, ProgGAN.

dna-scanner

Online tool for comparing prices and feasibility of DNA synthesis

dnaworks

Automatic oligonucleotide design for PCR-based gene synthesis

docker-blast

Dockerized NCBI Blast

dropsynth

Scripts to design DropSynth oligos

edinburgh_ug-igem2017-oligodesigner

evolvercli

A Command-Line Interface for the eVOLVER Continuous Culture Framework

example-task-server

Example server showing how to use the microservice task framework

geneious-mira

The MIRA (Mimicking Intelligent Read Assembly) genome fragment assembler is great for ‘tricky’ projects with high numbers of repeats and it can handle hybrid data. MIRA is used for tasks such as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. It works best on sequences with up to 100-150 megabases or 20-40 million reads.

graph-based-deep-learning-literature

links to conference publications in graph-based deep learning

gromacs-2018-benchmark-dgx1

Benchmark of Gromacs 2018 on NVIDIA DGX1 box

hands-on-deep-learning-algorithms-with-python

Hands-On Deep Learning Algorithms with Python, By Packt

introduction_to_deep_learning

Introduction to Deep Learning with theory and coding examples

machine-learning-for-proteins

Listing of papers about machine learning for proteins.

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

ml-workspace

🛠 All-in-one web-based IDE specialized for machine learning and data science.

netron

Visualizer for neural network, deep learning, and machine learning models

oligodesign

opendrop

Open Source Digital Microfluidics Bio Lab

primer3-py

Simple oligo analysis and primer design

protein-design-tutorials

Tutorials, cheat sheets, and other resources for computational methods for protein design.

proteinscaffoldcharacterization

Protein Scaffold Characterization

pydna

Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.