wehi-researchcomputing Goto Github PK

.github

WEHI Research Computing Public Repository

accessing-cloudstor

Code blocks for accessing cloudstor

alphafold2.0

annotation-tools

Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results

apptainerworkshop

bioconductor_maintenance

Repo to explore if bioconductor maintenance can be streamlined

bioinf-io-benchmark

bionix-gettingstarted

This repo will contain introductory documentation to workflow management system used at WEHI, namely BioNix and Snakemake

bionix-gettingstarted-milton

This repo contains documentation for running BioNix on WEHI's Milton HPC.

bionix-qc-pipe

bionix-scpipe

bionix-training

Repo to host Oct 2022 BioNix Training material

bionix-virusbreakend

carpentriesslides

Converts Carpentries workbench workshops to slides

cbioportal-vcf2maf-pipeline

cbioportal-vcf2maf-pipeline A pipeline, adapted from Genome Nexus annotation tools pipeline, to convert VCF files with somatic mutations into a single MAF for import into cBioPortal.

compliments

Used for intro to git workshop

container-recipes

Container recipes created by the RCP team

cryo_em_grid_detection_ai

cryo-EM Grid Detection

cyton-solver

A web application to utilize the Cyton2 model

dashacleditor

Dash GUI for editing Posix file acess control lists (ACLs)

data-commons

delaytional

A backend for DelayedArray that stores the array data in an SQL database.

dpd

A nextflow template pipeline with examples for asynchronous Download-Process-Delete style work

dynamicdet

[CVPR 2023] DynamicDet: A Unified Dynamic Architecture for Object Detection

encryptpassword

A simple script to request and encrypt a password or any text

environmentmodules

A user friendly R front-end for the Environment Modules system. Offers a way to load and unload system packages on shared HPC (High Performance Computing) environments, through R.

filesendercli

Improved command line interface and Python API for interacting with FileSender servers

gatk-benchmark

GATK WGS Somatic benchmark

genomics-invoicing

genomics-metadata-multiplexing

Genomics Metadata Multiplexing Repository