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Yuan Liu's Projects

amprocode-scripts icon amprocode-scripts

A database search algorithm proving the theoretical feasiblility of AmproCode and applied it to assess the coverage of the whole proteome and secretome via computational simulations

cage-prox icon cage-prox

Computer aided proximal decaging as a universal strategy for temporal protein activation

jax-unirep icon jax-unirep

Reimplementation of the UniRep protein featurization model.

ladder icon ladder

Combination of SILAC and Label Free Quantification

polymc icon polymc

a monte carlo package for simulating polymer models

pylrs-lib icon pylrs-lib

PylRS design with UAA rotamer generation and Funclib

rbm-polymer icon rbm-polymer

Restricted Boltzmann Machine of lattice polymer model

sbpcr icon sbpcr

Sequence-Based Prediction of Cysteine Reactivity Using Machine Learning

seaquan icon seaquan

LC-MS/MS SEArching and QUANtification Tips

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