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abyss

:microscope: De novo genome sequence assembler to assemble large genomes using short reads

alternative_cds_ends

Perl script for counting alternative C-terminal ends of Drosophila protein isoforms based on GFF file

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

bioperl-live

Core BioPerl 1.x code

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cdsgffsnp2fa

A perl script to generate fasta sequences for coding regions specified in gff file.

cosera

I am new.

darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

datasciencecoursera

datasharing

The Leek group guide to data sharing

devarticles

Develop Articles

dplyr

Dplyr: A grammar of data manipulation

edger

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/edgeR.html Contributions: http://bioinf.wehi.edu.au/edgeR. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=edgeR.

encode_downloader

Downloader for ENCODE

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

free-programming-books

:books: Freely available programming books

gfflib

Perl library to manipulate GFF files

gfftools

Perl scripts for working with the GFF format

ggthemeassist

A RStudio addin for ggplot2 theme tweaking

hello_world

博客文章开源代码分享区

kent

UCSC Genome Browser source tree. Stable branch: "beta".

mahout

Mirror of Apache Mahout

oh-my-zsh

A delightful community-driven (with 1,000+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

panda

Perl 6 module installer

pleac

Fork of pleac project http://pleac.github.io/pleac

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

pythondocument

translate python documents to Chinese for convenient reference 简而言之，这里用来存放那些Python文档君们，并且尽力将其翻译成中文~~

ria2

Source code for R in Action, Second Edition

somatic_pipeline

肿瘤体细胞突变检测流程（组织、cfDNA均可，需要有对照）