Comments (3)
from doc-annovar.
Running the operation as f I get this message:
NOTICE: Scanning filter database /opt/annovar/humandb/hg19_loftool.txt...Error: invalid database entry (generic ANNOVAR database should contain at least 4 tab-delimited fields per line):
Error running system command: <annotate_variation.pl -filter -dbtype loftool -buildver hg19 -outfile rslist rslist.avinput /opt/annovar/humandb/>
Head of file from http://www.openbioinformatics.org/annovar/download/LoFtool_scores.txt.gz :
Gene LoFtool_percentile
NIPBL 6.89E-05
SCN1A 1.38E-04
NOTCH1 2.07E-04
TSC2 2.76E-04
PTCH1 3.44E-04
SCN5A 4.13E-04
EP300 4.82E-04
CACNA1C 5.51E-04
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