Comments (3)
from doc-annovar.
The command line is
annotate_variation.pl -regionanno -build hg19 -out D_annov -dbtype phastConsElements100way /data/work/D_annov.txt humandb/
The input file is attached and part of my input
D_annov.txt
file is the following
1 751343 751343 A T rs28544273
1 751756 751756 C T rs143225517
1 752566 752566 G A rs3094315
1 753405 753405 C A rs61770173
1 768253 768253 A C rs2977608
The Error message in screen is
NOTICE: Output file is written to AD_annovar_part.hg19_phastConsElements100way
NOTICE: Reading annotation database humandb/hg19_phastConsElements100way.txt ... Error: invalid record in dbfile humandb/hg19_phastConsElements100way.txt (6 fields expected): <585 chr1 10917 11941 chr1.0 1 1024 0 /gbdb/hg19/multiz100way/phastCons100way.wib 0 0.522 1024 49.403 9.82319>
The output file shows that
ANNOVAR Version:
$Date: 2020-06-07 23:56:37 -0400 (Sun, 7 Jun 2020) $
ANNOVAR Information:
For questions, comments, documentation, bug reports and program update, please visit http://www.openbioinformatics.org/annovar/
ANNOVAR Command:
annotate_variation.pl -regionanno -build hg19 -out D_annov -dbtype phastConsElements100way /data/D_annov.txt humandb/
ANNOVAR Started:
Tue Jun 13 18:15:42 2023
NOTICE: Output file is written to D_annov.hg19_phastConsElements100way
NOTICE: Reading annotation database humandb/hg19_phastConsElements100way.txt ...
Thanks!
from doc-annovar.
Thanks for the guidance! I redownload the latest reference file and it works!
from doc-annovar.
Related Issues (20)
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from doc-annovar.