Comments (7)
The default config.ini must be put in the same folder with /path/to/InterVar.py
This is to read some important options firstly, in case some user's file lost some options.
Then will read your own config.ini, also it will update the user's options.
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the default config.ini in the same folder with InterVar.py,I mean, if I can creat other config.ini?
like sample.ini,only change input and output path ,and run :python /path/to/InterVar.py -c /path/to/sample.ini
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Yes, you can create and use you own sample.ini by -c option, but confirm the default config.ini is there.
The Intervar will use your option in your config file.
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Hi,
I am having the same problem:
Notice: Your command of InterVar is ['C:\Users\Hasnat\Documents\InterVar\InterVar-master\Intervar.py', '[config.ini]', '-c', 'config.ini']
Error: The default configure file of [ config.ini ] is not here, exit! Please redownload the InterVar.
The config.ini file is in the same folder as InterVar.py and I am simply trying to use the default config.ini file.
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Try to cd the intervar folder: 'C:\Users\Hasnat\Documents\InterVar\InterVar-master'
and run it again .
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That seems to have worked, thank you.
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thanks and fixed in the new version
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Related Issues (20)
- ANNOVAR OUTPUT FILE
- Annovar HOT 1
- depending on your command line, if you use this 1000g file, then you need HOT 3
- while all of variant is
- Why all mutations are judged Benign or Uncertain significance? HOT 5
- About InterVar Forecast Results HOT 1
- UnboundLocalError: local variable 'annovar_outfile' referenced before assignment
- line numbers HOT 2
- Keeping variant ID from VCF in intervar output
- Does not see all variants with REF allele longer than 1 letter HOT 5
- Error downloading database from annovar HOT 6
- Get Intervar output in vcf format HOT 1
- Update dbSNP 147 -> 150 and adding custom Freq DB
- Issue with running example HOT 1
- Failed ANNOVAR HOT 6
- I just want to know the acmg result and NGF of a certain mutation site HOT 2
- How to upgrade acmg rules to 2022 HOT 2
- Run InterVar on pre-annotated VCF (annotated using a different tool) HOT 1
- Duplicates HOT 1
- Failed to download Annovar database : 1000g2015aug HOT 1
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