Comments (7)
Hi,
Thank you for your comments!
-
I will add the option to not remove the barcodes.
-
It is because you have choosen to have 4 mismatches in fuzzy mode. I will put a cap at 1 or 2 I think, because otherwise this will happen. How long barcodes do you have?
-
Nice to know! I will make the program work in batches instead for reading everything into memory at once!
I'll let you know when I am done!
Thanks!
William
from nanomux.
Thanks for considering these options!
I will try to set a cap of 1 or 2 as you suggested and check the results. My barcodes are 24nt long.
How about incorporating barcodes with degenerate bases? For example, using Y to represent A or G, and R to represent C or T.
Thanks!
Xiu
from nanomux.
I will try.
Please try it with greedy mode as well and check the results!
from nanomux.
I have now added the three points that you suggested. Thanks for the nice suggestions!
Please reinstall everything and try it out! See the new readme for usage.
Regards,
William
from nanomux.
Hi @Jia-Xiu,
I did a lot of changes to the fuzzy searching algorithm now.
Mismatch of 3 works good for me now. It is quite much slower than if using 1 or 2, but it finds more barcodes and not as many duplicates as before.
Please download the newest version and try again!
Thanks,
Ville
from nanomux.
Thank you @willros!
My job using the previous version is still running. It takes about 2 hrs to write the output of each sample (fuzzy with mismatch of 1). I will run the new version and check the results.
Cheers,
Xiu
from nanomux.
Maybe kill the current job and try again with the newest version.
How many samples do you have to demux?
from nanomux.
Related Issues (6)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from nanomux.