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acgs_gel_api_workshop

Repository of code for use in the ACGS-Gel Workshop

automate_demultiplex

a script to automate demultiplexing on the workstation attached to the nextseq

bcbio_validation_workflows

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

bioinformatics-research-project

bugbot

:honeybee: Finally, your Github Issues in Slack

clamms

CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.

cve-2021-44228_scanner

Scanners for Jar files that may be vulnerable to CVE-2021-44228

dnanexus_fastqc

dnanexus_multiqc

eggd_workflow_dias

flt3_itd_ext

FLT3-ITD script based on in-silico extension and clustering

gatk-casestudy

GATK Variant Calling Workflow using Galaxy, CWL and Cpipe

gene_lists

List of gene lists for genomic analyses.

genome-data-integration

Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls

giab_announcement_blog

This repository contains recent announcement or blog post from the Genome in a Bottle Consortium

heatitup

Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.

hts-nim

nim wrapper for htslib for parsing genomics data files

mindtouch_core

A fork of MindTouch Core from https://sourceforge.net/projects/dekiwiki/

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

qc3

QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.

synthwave-vscode

Synthwave inspired colour theme for VS Code 🌅🕶

unzipper

Small class to extract + compress .zip, .gz, .rar archives via browser.