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xiaoyezao's Projects

deepmind-research icon deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

mcscanx icon mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

phyrn icon phyrn

Phylogenetic Reconstruction in the "Twilight-Zone" of Sequence Similarity

pollination_networks icon pollination_networks

R scripts and data for Doré et al., 2020 - Relative effects of anthropogenic pressures, climate, and sampling design on the structure of pollination networks at the global scale.

ratite-genomics icon ratite-genomics

Scripts and other material for the assembly and analysis of ratite genomes.

rust-mdbg icon rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

subphaser icon subphaser

Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.

synnet-py icon synnet-py

An adapted SynNet-Pipeline from https://github.com/zhaotao1987/SynNet-Pipeline

taper icon taper

Removing misaligned regions

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