Segmentation fault (core dumped) about msisensor-pro

[PengJia6]

Hi,

@iichelhadi Which version of msisensor-pro did you use and how did you install msisensor-pro?

best,
Peng

[iichelhadi]

Hi,

@iichelhadi Which version of msisensor-pro did you use and how did you install msisensor-pro?

best,
Peng

thanks for the reply.
I installed version 1.0.2 and I installed it using conda
conda install msisensor-pro

[PengJia6]

There were also similar error before version 1.2.0 (#16). Could you please try the lastet version(1.2.0).

PS: Maybe, you need to install the 1.2.0 by docker or build by yourself. And you can also try to run the binary file, if you use ubuntu system.

[iichelhadi]

There were also similar error before version 1.2.0 (#16). Could you please try the lastet version(1.2.0).

PS: Maybe, you need to install the 1.2.0 by docker or build by yourself. And you can also try to run the binary file, if you use ubuntu system.

I don't have admin privileges on the HPC so I can only install the version that is available in anaconda

[PengJia6]

@iichelhadi Could you please use the binary version? You can download it directly from here.

[iichelhadi]

@iichelhadi Could you please use the binary version? You can download it directly from here.

thnk you. Not sure how to use it

[PengJia6]

@iichelhadi

Please run the following commads!

wget https://github.com/xjtu-omics/msisensor-pro/raw/master/binary/msisensor-pro    
chmod +x msisensor-pro     
./msisensor-pro

[PengJia6]

@iichelhadi

Is that all right?

[iichelhadi]

@iichelhadi

Is that all right?

apologies. having an issue with a different library when I try to run it I get the following error:
./msisensor-pro: error while loading shared libraries: libhts.so.3: cannot open shared object file: No such file or directory

i have contacted our IT department to resolve this issue.

[PengJia6]

@iichelhadi Sorry for the bad installation, I have pull a request in bioconda to support msisensor-pro:v1.2.0 installation with conda. Please install msisensor-pro with

conda install msisensor-pro 

[iichelhadi]

@iichelhadi Sorry for the bad installation, I have pull a request in bioconda to support msisensor-pro:v1.2.0 installation with conda. Please install msisensor-pro with

conda install msisensor-pro 

I did as you mentioned. The version installed is v1.0.2 instead of v1.2.0

[PengJia6]

@iichelhadi Thanks for your patient!