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Name: Xizeng (Ethan) Mao

Type: User

Bio: Bioinformatics Scientist and Computer Engineer. Proficient in Python, R, Bash, Rust, C/C++, Golang, Javascript and Java.

Location: Houston, TX

Xizeng (Ethan) Mao's Projects

cBioPortal for MD Anderson Cancer Center

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

KIT (Keep It sTupid): Yet another keyword-based manager of small command line tools

KOBAS: a command line tool for identifying significant pathways from genomic data

monaco font patched with extra nerd glyphs

Aggregate results from bioinformatics analyses across many samples into a single report.

Package for pooling the results from (dependent) tests

Module for practical Python one-liners

Some utility functions to manipulate SAM/BAM files

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Community-provided extensions to Seurat

Code for STM paper

Cross-platform subsystem of console environment on windows, mac and linux.