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bamtobw

Convert BAM files to bigWig files with a simple command

beable_circrna_methods

beidou

Base/Prime Editor Induced DNA Off-target site identification Unified toolkit

bsrna-seq-m5c

Pipeline for m5C calling.

cdcscreen

Source code for the computational analysis of functional circular RNAs screening using the CRISPR-Cas13 system

cfbi

CFBI is custom Perl and Shell scripts for base substitution and indel frequencies calculation.

circexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circexplorer2

circular RNA analysis toolset

circfinder

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

circpseudo

Pipeline for circRNA-derived pseudogenes

circshapemapper

clear

direct comparison of circular and linear RNA expression

csi

Complementary Sequence Index (CSI)

demining

DEMINING: a stepwise computational framework to directly detect expressed DNA and RNA mutations in RNA deep sequencing data (DEMINING).

epitranscriptomic-maps-of-5-methylcytosine

This is the bioinformatical analysis pipline associated with "Epitranscriptomic maps of 5-methylcytosine reveal substrate diversity of NSUN methyltransferases and links to mRNA translation and turnover"

nucleolar-urb1-ensures-3-ets-rrna-removal-to-prevent-exosome--surveillance

radar

RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.

rnalight

a machine learning model to identify nucleotide features determining RNA subcellular localization

scapture

terate

TERate is a computational pipeline to measure transcription elongation rates (TERs) with 4sUDRB-Seq.

yanglab.github.io