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anvio

An analysis and visualization platform for 'omics data

basel_carbapenemases

Includes all code necessary to reproduce the analysis of our 2018 comparative genomic analysis of Carbapenemase producing bacteria isolated in Basel.

calango

:exclamation: This is a read-only mirror of the CRAN R package repository. CALANGO — Comparative Analysis with Annotation-Based Genomic Components. Homepage: https://labpackages.github.io/CALANGO/ Report bugs for this package: https://github.com/fcampelo/CALANGO/issues/

circlize

Circular visualization in R

community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome

comparative-genomic-analysis-p.dorei

Comparative genomic analysis of Phocaeicola dorei-like strains isolated from either pre-industrial or industrial populations

geocompr_r

Geocomputation with R: an open source book

getorganelle-

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

global-bacterial-diversity-in-wwtps

icamp

:exclamation: This is a read-only mirror of the CRAN R package repository. iCAMP — Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis. Homepage: https://github.com/DaliangNing/iCAMP1

mcl

MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.

modelomatic

Modelomatic - A software for model selection across state-spaces

orthofinder

Phylogenetic orthology inference for comparative genomics

pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

pan-genome-visualization

Visualization of the pan-genome output by panX

paper_putman_communityassembly

Data files generated and used for analyses and R code used for data processing and analyses

phd_luncheng-second-order_metaanalysis

Data and scripts supporting the PhD of Luncheng You

plastisphere-metaanalysis

pokemon-red-proc-randomizer

A procedural randomizer for Pokemon Red that can be run off yaml files

qiime2chinesemanual

QIIME 2中文文档(QIIME 2 Chinese Manual)

rare-and-abundant-bacteria-

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

sheng-xin-xiao-bai-yu

历史文档备份（只包含2019年和2020年）

slack-emoji-pokemon

Slack Pokemon Emojis

table2itol

Generating iToL annotations from Spreadsheet or CSV files

tidyverse120

玩转数据处理120题—R语言tidyverse版本

tomatosuperpangenome

Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon