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app_web_testcogmanager

This is a site for implementation, application and management of cognitive tests.

basic_programs_in_python

Basic programs in Python to guide new people in this language

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

caliscoma_pipeline

Pipeline for drug ranking based on computed pathway scores of disease and healthy samples

canceroutcomeprediction

Graph Kernel based outcome prediction using patient interactomes

curso_intro_prog_biol

Curso introdutório sobre programação para biólogos

dashboard-srag-mobility

Dashboard for analysis of Severe Acute Respiratory Syndrome (srag) dataset and Google's community mobility change (mobility) in Streamlit

dashboard-streamlit-movies

Dashboard illustrating a series of exploration analysis in the movies dataset

dashboard_impatient_discharges

Dashboard visualization in pure HTML, Javascript and css. Using serverless requests to API for data analysis and statistics summarization.

dscrank

This is an implementation of the method DSCrank for selecting and ranking semantic datasets from catalogues, executing mapping of their data items, delivering this associations to be voted by a crowd (part implemented for web: http://ypublish.info/crowdsourcing-validation/, but configured in the app) and as a final result it does the integration and generates a new version of the source dataset to be interlinked.

englishimagetranslation

Tool for english images conversion and translation

epicurator

Epitopes Curation Tool

foca_api

API written in Python-Flask to retrieve processed data from the samples metadata exported by GISAID

foca_webapp

Web application for covid-19 samples metadata from GISAID, illustrating the use of the request functions provided by FOCA-API

grakel

A scikit-learn compatible library for graph kernels

hppidiscovery

Scientific workflow to augment, predict and evaluate host-pathogen protein-protein interactions

ivy

The Unified Machine Learning Framework

manupcal_api

Laravel API for management of licenses of software systems and applications usage as well as addition of users and permission levels by application

manupcal_app

Web application for management of licenses of software systems and applications usage as well as addition of users and permission levels by application

medicalimagevolume

minicurso_r

Curso de R/Rstudio

msig

JavaScript SDK to operate NCI/DCEG's Mutation Signature (mSig) API

mutasig

Tensorflow model to classify mutational signatures on Cancer Single Nucleotide Variation files.

paprec_pipeline

Python pipeline to prepare epitopes and protein sequence datasets, extract numerical features from sequence with alignment-free methods, perform model evaluation and test model performance upon feature selection.

partitions_mtw-nuxt-components

This repository contains a collection of reusable components that can be integrated into Nuxt.js projects to accelerate development and maintain design consistency throughout the application.

pipeaggregationinfo

Pipeline to check correlation among proteins in interactomes using GEO gene expression datasets

ppi_validation_process

Python pipelines to filter positive predicted protein interactions according to two criteria: (i) association rules of cellular components according to gold standard PPI data from HINT and (ii) text mining on scientific papers published on Pubmed extracting sentences where the proteins in the PPIs appeared in an interaction context

ppintegrator

Python pipelines to prepare PPI (Protein-Protein Interactions) data from reference databases and describe them semantically using ontologies

predprin

Scientific workflow to predict protein-protein interactions based in a combined analysis of multiple protein characteristics.

preselantest_pipeline

Python3 pipeline to predict t-cell epitopes or parse b-cell bepipred results, filter epitopes and perform multiple-model antigenicity test.