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a-deep-learning-model-for-predicting-next-generation-sequencing-depth-from-dna-sequence

A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence

afc

Calculates allelic Fold Change (aFC) using standard input files for fastQTL.

biopython

Official git repository for Biopython (originally converted from CVS)

bustools

Tools for working with BUS files

cellbender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

cloudgene

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

covid_rna_splicing

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

ddqc

Biology-centered data-driven quality control for scRNA-seq

docker-cellranger

Dockerized Cell Ranger

docker-run-action

docs

The open-source repo for docs.github.com

dvc

⚡️Data & models versioning for ML projects, make them shareable and reproducible

dvc.org

🔗DVC website and documentation source code

eaglec

A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

fastqtl

Enhanced version of the FastQTL QTL mapper

featured-notebooks

fgbio

Tools for working with genomic and high throughput sequencing data.

fgprimer

APIs and wrappers for performing PCR primer design related tasks

fingerprint_maps

Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.

gpbioinformatics

gwas-summary-statistics-standard

Documentation on new GWAS Summary Statistics Standard

hap.py

Haplotype VCF comparison tools

horsefish

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

imputationbot

Automate interactions with the imputation servers :robot:

imputationserver

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

jvarkit

Java utilities for Bioinformatics

kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing