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acpp

Accelerated C++

alignment

Needleman-Wunsch algorithm for global sequence alignment

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

blog

The source of my blog

bootstrap

The most popular front-end framework for developing responsive, mobile first projects on the web.

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

cabbagelooper

Cabbage looper

canu

A single molecule sequence assembler for genomes large and small.

convolution

Calculate p-values for Copynumber Variations across Samples

cprogramexam

Automatically exported from code.google.com/p/cprogramexam

cs106a

Stanford CS106A assignment

datamash

mirror of GNU Datamash

deeplearntoolbox

Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.

devnotes

digit_recognition

Simple neural networks for digit recognition

dotemacs

My .emacs and .emacs.d

doubanfm

Douban FM

fastx_toolkit

FASTA/FASTQ pre-processing programs

fullscreenmario

An HTML5 remake of the original Super Mario Brothers - expanded for wide screens.

galaxy-pipelines

Galaxy pipelines

hwproj

iterm2

iTerm2 is a terminal emulator for Mac OS X that does amazing things.

jquery-autocomplete

lagan-fork

a fork of the Michael Brudno's LAGAN

linux

Linux kernel source tree

mathematicsbiostatisticsbootcamp2

The github repository for mathematical biostatistics bootcamp 2

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

mitcr

MiTCR is a software for processing T-cell repertoire sequencing data

mode-compile

Compile files according to major-mode

octopress

Octopress is an obsessively designed framework for Jekyll blogging. It’s easy to configure and easy to deploy. Sweet huh?