yfukai/m2stitch
MIST-inspired microscope image stitching package
postdoc, physics
Repositories
yfukai/yfukai.github.io
Personal website for Y. T. Fukai
yfukai/napari-travali
Track validator on napari (version 3 on tracksdata)
yfukai/laptrack
Particle tracking by solving linear assignment problem.
yfukai/microflow
Nextflow, Jupyter and papermill-based notebooks and workflow for microscopy image preprocessing.
yfukai/tracksdata
A common data structure and basic tools for multi-object tracking.
yfukai/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
yfukai/yfukai
yfukai/github-readme-stats-yfukai
:zap: Dynamically generated stats for your github readmes
yfukai/obsidian-zotlit
A third-party project that aims to facilitate the integration between Obsidian.md and Zotero, by providing a set of community plugins for both Obsidian and Zotero.
yfukai/polus-plugins
yfukai/labbox
yfukai/napari
napari: a fast, interactive, multi-dimensional image viewer for python
yfukai/trackarray-tensorstore
A interface to store and modify segmentation and tracking result as a tensorstore array.
yfukai/bioio-czi
A BioIO reader plugin for reading CZI files.
yfukai/vscode-grammer-proofread
yfukai/my_academic_data
Storing, compiling and deploying personal academic data
yfukai/arboretum
Track and lineage visualization with btrack, LapTrack and Napari
yfukai/microscopy_image_segmentation
Image segmentation / summarization workflow for zarr images.
yfukai/napari-segmentation-human-in-loop
Another implementation of human-in-loop segmentation training in napari.
yfukai/psygnal
Python observer pattern (callback/event system). Modeled after Qt Signals & Slots (but independent of Qt)
yfukai/napari-plugin-template
A template repo used to make new napari plugins
yfukai/napari-docs
Documentation for napari (other than API docs)
yfukai/napari-travali-old
Cell track editor based on napari
yfukai/yfukai-pypitemplate
Template for PyPI-packages , based on Statistics Norway template and hyper modern python.
yfukai/git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
yfukai/draccus
Configuration with Dataclasses+YAML+Argparse. Fork of Pyrallis
yfukai/boilerplate-python
Boilerplate scripts in Python
yfukai/dockerfiles
Useful / basic/ modular docker images for analysis
yfukai/benchmarks
A home for benchmark scripts