yichangyu Goto Github PK

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bioinformatics-genome-assembly-and-analysis-workshop-pac-bio-and-10x-genomics-

Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

copilot

Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.

cruk-summer-school-2018

Summer school course materials collection

how-to-be-a-good-programmer

I'm here to tell you some amazing stuff which teacher would never tell you.

htpmod-shinyapp

A Shiny Application for Modeling and Visualization of Large-Scale Biological Data

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

intro-to-chipseq

Intro to ChIPseq using HPC

isoseq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

necorr

ohmyzsh

🙃 A delightful community-driven (with 1500+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

plantgrns

Integration of genome-wide TF binding and expression data to characterize plant gene regulatory networks

sckb

Use kallisto and bustools to call the gene-cell matrix for both spliced and unspliced transcripts of scRNA-seq

scrna-seq

scrnaseq-analysis-notes

scRNAseq analysis notes from Ming Tang

test_rstudio

training-modules

Materials for short, half-day workshops

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities