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adv-r

Advanced R programming: a book

adventofcode

algorithm-base

专门为刚开始刷题的同学准备的算法基地，没有最细只有更细，立志用动画将晦涩难懂的算法说的通俗易懂！

analyze_cytof_using_seurat

Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level. There are multiple tools to analyze CyTOF data but here I am presenting a tutorial of how one can quickly use Seurat (R package for scRNA-Seq analysis) for analyzing CyTOF data and understand the cellular and phenotypic diversity

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-bioie

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-cell-detection-segmentation

nucleus/cell and histopathology image classification,detection,segmentation

awesome-cheatsheets

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

awesome-microbes

awesome-multi-omics

List of software packages for multi-omics analysis

awesome-proteomics

List of software and databases for proteomics.

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-r

A curated list of awesome R packages, frameworks and software.

beginr

an R package for beginners

benchmarkmicrobiome

Large-scale Benchmarking of Microbial Multivariable Association Methods

biobert

BioBERT: a pre-trained biomedical language representation model

bioinformatics

Code inspired by Bioinformatics Algorithms: an Active Learning Approach.

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

bookdown

Authoring Books and Technical Documents with R Markdown

bprna

bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure

bringing-old-photos-back-to-life

Bringing Old Photo Back to Life (CVPR 2020 oral)

cancer_notes

A continually expanding collection of cancer genomics notes and data

chinamapjsondata

about china map json data，各个省市县的json数据都在里面，最外面的datas.json是全国的

circlize

Circular visualization in R

clv

Compositional Lotka-Volterra

cobradb

COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.

colformat

Format columns with colour

commonfunctions

personal regular R functions