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bme-labs

brats20-survivalprediction

This repository contains the code and further information for our contribution to the survival prediction task of the 2020 Brain Tumor Segmentation Challenge (BraTS).

deepmedicplus

Deep learning for brain metastasis detection and segmentation in longitudinal MRI data

deepneuro

A deep learning python package for neuroimaging data. Made by:

deepsurvival-baseline

doselo

DOSELO (Dose Segmentation Loss Function): Dose Guidance for Radiotherapy-oriented Deep Learning Segmentation

gandlf

A generalizable application framework for segmentation, regression, and classification using PyTorch

gbm-data-longitudinal

This repository contains code used to prepare the LUMIERE Glioblastoma dataset.

gbm-longitudinaleval

gbm-progressionfeatures

This repository will contain the code used for the paper "Towards MRI Progression Features for Glioblastoma Patients: From Automated Volumetry and Classical Radiomics to Deep Feature Learning" by Suter et al., appearing in the proceedings of the 3rd Machine Learning in Clinical Neuroscience Workshop held at MICCAI 2020.

gbm-robustradiomics

Code accompanying the paper "Radiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class boundaries, and machine learning techniques"

hd-glio-auto

Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, T1-subtraction mapping and HD-GLIO in one Docker container)

hitobito

A web application to manage complex group hierarchies with members, events and a lot more.

hitobito_generic

A hitobito wagon defining a basic, generic organization hierarchy.

hitobito_pbs

A hitobito wagon defining the organization hierarchy and additional features for Pfadibewegung Schweiz.

klarnet

mialab

Medical Image Analysis Lab (MIALab), University of Bern

new-modules

New modules created for diffusion MRI tasks in 3D Slicer

openbtai-radiomics

pymia

pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis

pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.

reproducibility-checklist-miccai

Checklist to promote reproducible research for the MICCAI conference. Created during the MICCAI Hackathon 2020.

slicerdmri

Diffusion MRI in 3D Slicer open-source medical imaging software

towardsgbmprogression

tracktolearn

Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning

zukunftstag2023