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ksir's Projects

bibliometrix icon bibliometrix

An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

cameo icon cameo

cameo - computer aided metabolic engineering & optimization

ccs icon ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

cobra icon cobra

A Commander for modern Go CLI interactions

codaseq icon codaseq

Functions for compositional analysis of high throughput sequencing

congo icon congo

A powerful, lightweight theme for Hugo built with Tailwind CSS.

funguild icon funguild

FUNGuild: parsing OTUs into functional guilds

gephi icon gephi

Gephi - The Open Graph Viz Platform

ggpicrust2 icon ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

hifiasm icon hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

liu2020proteincell icon liu2020proteincell

Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome

microeco icon microeco

An R package for data analysis in microbial community ecology

otu2v-upplot icon otu2v-upplot

A pipeline for drawing Venn and Upset plot using microbial OTU or profiling tab

pbbioconda icon pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

picrust2 icon picrust2

Code, unit tests, and tutorials for running PICRUSt2

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