Comments (3)
Good catch and thanks for your report. The reorder issue has been removed in ggtree (version >=0.99.18).
For the line up issue, since that can't be supported internally in current version of ggplot2 (please refer to the Linked micromaps section in ggplot2's wishlist feature requests), gplot will output a list of ggplot2 objects and user can manual adjust them if they can't be aligned properly.
Of course, I will explore some possibilities to align them more accurately.
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Thanks for the quick fix!
As for the alignment issue I did find that adding scale_x_continuous(expand = c(0, 0)) + scale_y_continuous(expand = c(0, 0))
to the tree plot allowed for better alignment.
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In devel branch, I have created another function called gheatmap, will will always line up the heatmap to the tree properly.
please refer to the new vignette: http://www.bioconductor.org/packages/3.2/bioc/vignettes/ggtree/inst/doc/ggtree.html
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Related Issues (20)
- Unwanted white lines between tiles in gheatmap layout circular/fan
- rect_to_poly issue HOT 9
- Tree tips not colored according to specified colors HOT 2
- geom_cladelab doesn't facet
- facet_plot will not plot correctly align to branch in ggtree
- geom_hilight rectangle unreasonably long
- geom_highlight compresses the tree slightly HOT 1
- Basic functionality missing from ggtree
- Problems with Collapse function
- Same name on one tree (2 copies), add links to another tree problem
- 无法正常绘制layout = "equal-angle"的tree
- theme_tree2 scale bar width
- chunky resolution of circular tree segments
- geom_taxalink error "as_string() Can't convert `NULL` to a string." HOT 2
- Sorting Problem of Evolutionary Leaf Node Labels//咨询进化树叶节点的排序问题 HOT 3
- ggtree adds unexpected branch/node HOT 1
- No "read.r8s" HOT 2
- Can not find function getsubtree HOT 1
- geom_hilight HOT 3
- Interactivity with ggiraph
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