Zach Marin's Projects
Autonomous Software for Light Microscopy - Open source light-sheet microscope controls.
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Introduction to Python Software Development on GitHub
PYME module for cross correlation-based drift correction with support for both image and localization data.
Academic CV
Group Project for Deep Learning Theory and Application
Modular microscope control in LabView.
Software examples for Thorlabs motion control products (e.g. K-Cube brushless, DC, and Piezo motor controllers)
Simple mathematical operations on image, point and surface layers.
Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.
Conda recipes for PYME dependencies which are not distributed in the "conda" or "anaconda" channels
Template for making plug-ins for the Python-Microscopy Environment (PYME)
Fast compression of image data using with noise level quantization
Python wrapper for the Java Native Interface
The python-microscopy environment - an open-source package for light microscopy
A simple Hoare triple verification condition generator.
catch all
A CDCL SAT solver.
An open source digital holographic microscopy toolkit in Python.
TraitsUI: Traits-capable windowing framework
Website of Zach Marin