zehuali's Projects
Non-official Git repository for R package cellrangerRkit (currently not available elsewhere)
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
The CanceR Single Cell ExpressioN Toolkit is a scalable and standardized set of algorithmic methods, tools, and a data portal deployed on cloud computing infrastructure to support single cell genome analysis of cancer specimens. To allow comparison of cells in cancerous and healthy tissues, the system will aggregate single-cell genomic data generated by cancer researchers and connect them to international reference data generated by experts from around the world as part of the Human Cell Atlas. This data sharing and aggregation system is a key differentiating factor in CReSCENT that will increase researcher productivity by accelerating execution and comparison of computational methods, as well as providing contextual data for understanding how cells behave within tumour tissues. This platform, which will be useable by any researcher on any computing platform, will assemble a crucial data resource to navigate the upcoming wave of single cell cancer genomics research. CReSCENT will bring together researchers across a broad spectrum of scientific areas and disease types and increase the impact of data generated across research programs. In the long term, this system will pave the way for novel single cell diagnostics and discovery of new drug strategies for improved health care.
Toolkit for analyzing single cell RNA-seq data
a curated list of R tutorials for Data Science, NLP and Machine Learning
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
DroidNCM I'm sorry to here github fucked by [email protected]
GCA: Gene Correlation Analysis for Single-cell RNA-seq data
A fork of Git containing Windows-specific patches.
R/Bioconductor-based access to single-cell genomics data generated by the Human Cell Atlas Project.
Vignette Engine wrapping Jupyter Notebooks
Scrape and manage nCov2019 related data from media using Pandas DataFrame
Few pieces(parts) regarding Public dataset recommender system and how to get around with comparing your own Datasets. Datasets Recommender system | Bio-NLP | WIP...
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Comprehensive list of color palettes available in r โค๏ธ๐งก๐๐๐๐
A package to help convert different single-cell data formats to each other
Mouse cell atlas
Dockerfile for the base software of scRNA.seq.course
Single-cell Scalable Visualization and Analytics
Weighted gene co-expression network analysis for scRNA-seq data in Seurat
A guide to using a Seurat object in conjunction with RNA Velocity
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Clone of the Bioconductor repository for the SingleR package.
code for data processing and visualisation associated with the stromal subclasses manuscript
Toolsets for bioinformatics data analysis (R package)
in silico identification and deconvolution of scRNA doublets