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Dachuan Zhang's Projects

3d_molecules icon 3d_molecules

Given a chemical formula in smiles format, converts it to 3D model

atlas icon atlas

ATLAS - Three commands to start analyzing your metagenome data

bert icon bert

TensorFlow code and pre-trained models for BERT

bglb_family icon bglb_family

Quantitative prediction of mutant function across an enzyme family

bidd-molmap icon bidd-molmap

MolMap: An Efficient Convolutional Neural Network Based Molecular Deep Learning Tool

biobert icon biobert

BioBERT: a pre-trained biomedical language representation model

biobert-pretrained icon biobert-pretrained

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

biodegradability icon biodegradability

Classification model using R to predict the biodegradability of various chemicals

biodegradable_chemicals icon biodegradable_chemicals

Learning models on a data set containing values for 41 attributes (molecular descriptors) used to classify 1055 chemicals into 2 classes (ready and non-ready biodegradable)

biomedr icon biomedr

generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

cgrtools icon cgrtools

CGRs, molecules and reactions manipulation

chembench icon chembench

MoleculeNet benchmark dataset & MolMapNet dataset

chemprop icon chemprop

Message Passing Neural Networks for Molecule Property Prediction

controlled-peptide-generation icon controlled-peptide-generation

source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molecular Dynamics"

d2 icon d2

Speed virtual screening by 50X

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