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abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

bigsdb

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

binggpt

Desktop application of new Bing's AI-powered chat (Windows, macOS and Linux)

bioawk

BWK awk modified for biological data

bloop

bloop is a fast code search engine written in Rust.

breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

c_amps-prediction

cblaster

Find clustered hits from a BLAST search

chatgpt-next-web

One-Click to deploy well-designed ChatGPT web UI on Vercel. 一键拥有你自己的 ChatGPT 网页服务。

cloudreve

🌩支持多家云存储的云盘系统 (Self-hosted file management and sharing system, supports multiple storage providers)

conda

OS-agnostic, system-level binary package manager and ecosystem

cuda-clustalw

A sequence alignment tool

dfast_core

DDBJ Fast Annotation and Submission Tool

easyfig

Development version of Easyfig

easymetagenome

Easy Metagenome Pipeline

easymicrobiome

fasparser

A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data

fastani

Fast Whole-Genome Similarity (ANI) Estimation

fasttopics

Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

figtree

Automatically exported from code.google.com/p/figtree

galaxy

Data intensive science for everyone.

ggplot2

An implementation of the Grammar of Graphics in R

github520

:kissing_heart: 让你“爱”上 GitHub，解决访问时图裂、加载慢的问题。（无需安装）

grapetree

GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html

harvest

hello-world

study GitHub

install_aspera_connect

Install latest version of Aspera Connect and show example how to use it for downloading sequening data.