SynetBuilding- Diamond.sh about synnet-pipeline

[zhaotao1987]

Maybe check your input genome abbreviations at Line 41 of the script.

According to your instruction;
Put all pairs of ".pep" and ".bed" of your genomes under one folder, copy the script (SynetBuilding- Diamond.sh) to the same folder.
after making dir ; mkdir ../DiamondGenomesDB
diamond makedb --in ../$i.pep -d ../DiamondGenomesDB/$i

Error
diamond v0.9.24.125 | by Benjamin Buchfink [email protected]
Licensed under the GNU GPL https://www.gnu.org/licenses/gpl.txt
Check http://github.com/bbuchfink/diamond for updates.
#CPU threads: 4
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Database file: ../.pep
Opening the database file... No such file or directory
[8.7e-05s]
Error: Error opening file ../.pep**