Name: Pu Zheng
Type: User
Company: Whitehead Institute
Bio: Postdoctoral Fellow in Jonathan Weissman Lab, Whitehead Institute, MIT.
PhD in Biochemistry, advised by Xiaowei Zhuang, Harvard University
Twitter: sclerei
Location: Cambridge
Pu Zheng's Projects
Chromatin analysis pipline in Zhuang lab
jupyter notebooks for chromatin analysis in Xiaowei Zhuang lab, using my package ImageAnalysis3
Oligo pool libraries designed for DNA and RNA imaging in Zhuang lab
Zhuang lab chromatin tracing codes
Code release for ConvNeXt model
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
GPU-accelerated Levenberg-Marquardt curve fitting in CUDA
Repository for 2017 fall Harvard CS281 ML course
Simply test how to use GitHub
Image analysis scripts for conventional DNA and RNA FISH imaging
MERFISH analysis scripts in Zhuang lab
A python3 pipeline for MERFISH probe design.
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
Merfish microscope master repository
This is intended to control STORM6.5 setup using Lumencor Celesta illumination system.
Jupyter scripts for MERFISH imaging in Weissman and Zhuang lab