zhong-lab-ucsd Goto Github PK

4dn-web-portal

Web Portal for 4DN

ad_prediction_blood

applied-genomic-technologies

beng183

Lecture materials

beng183_2022fall_applied-genomic-technologies

Repository for 2022Fall BENG 183 Applied Genomic Technologies

beng183_2023fall_applied-genomic-technologies

Repository for BENG 183 Applied Genomic Technologies

beng183_fa2020_courseproject

beng183_final_projects_fall2019

BENG183_Final_Projects Fall 2019

breast_cancer_recurrence_classifier

breastcancerclassifier

chrom-region

Chromosomal region class used in GIVE, supporting some basic region operations

ckgedit

CKEditor integrated into Dokuwiki

dokuwiki-plugin-oauth

Dokuwiki oAuth plugin based on authpdo instead of authplain

epialignment_webapp

EpiAlignment web service

epievolutionarymodel

Development of a joint evolutionary model for the genome and the epigenome

genomeplot

Plot bedfiles over the entire genome with chromIdeoBands

genomic-interactive-visualization-engine

Genomic Interactive Visualization Engine

genomic-interactive-visualization-engine-1

Genomic Interactive Visualization Engine

give-docker

Dockerfile, scripts and other files for building GIVE-Docker

give_demo

Genomic Interactive Visualization Engine Demo

give_homepage

Homepage of GIVE redirected from https://give.genemo.org

hictool

Python library for processing and visualizing Hi-C data

hifislides

Processing pipeline for the HiFi-Slides technology developed in the Sheng Zhong Lab.

imargi-docker

iMARGI-Docker distributes the iMARGI sequencing data processing pipeline

imargi_methods

iMARGI data processing methods

ivf_data_analysis

mapsilverseqdatawithexcerpt

mario

program for RNA Hi-C

modified_cooler

A cool place to store your Hi-C

multiqc_modified

Aggregate results from bioinformatics analyses across many samples into a single report.