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annotsv

Annotation and Ranking of Structural Variation

cnvkit

Copy number variant detection from targeted DNA sequencing

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dockstore-cgpwgs

Dockstore implementation of CGP core WGS analysis

go_prediction_ml

Gene Ontology Prediction Using Machine Learning Methods

gpu_mapping

Parallel short read mapping using CUDA

hello-github-actions

mlflow

Open source platform for the machine learning lifecycle

playground

An irrelevant project where I keep various code I wrote while learning

scalable-ngs

Scalable NGS pipeline implemented in Spark environment

seqtools

Program for searching target sequences and analyze genes based on number of sequence matches

theta

Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.

toil_container

:whale: A python package with container support for Toil pipelines.

yikyakterminal

Python Yik Yak Command Line + YakMining + CSV keyword search = Happy College IT

zhouyangyu.github.io