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adv-r

Advanced R programming: a book

art-r-translation

《R语言编程艺术》翻译项目文件

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

basset

Convolutional neural network analysis for predicting DNA sequence activity.

book-example

Example code for my book on TDD with Python

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cdhit

Automatically exported from code.google.com/p/cdhit

clipper

A tool to identify CLIP-seq peaks

cocoapi

COCO API - Dataset @ http://cocodataset.org/

course-v3

The 3rd edition of course.fast.ai

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cutadapt

Cutadapt removes adapter sequences from sequencing reads

danq

A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

dlaicourse

Notebooks for learning deep learning

doing_bayesian_data_analysis

Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

dragonstar2019

duplex

Scripts for the analysis of PARIS RNA structure data

dwt

Deep Watershed Transform for Instance Segmentation

encoded

Metadata database for ENCODE 3

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

ggplot2-tutorial

Teaching materials for the R package ggplot2

git-recipes

:octocat: Git recipes in Chinese. 高质量的Git中文教程.

gridtools

Tools for analyzing genome-wide RNA-chromatin interaction data

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

icount

iCount, protein-RNA interaction analytics

icshape

icSHAPE pipeline