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230k-dendrite-tracing

This is a repo for experimental codes on large-scale reconstruction of 230k mouse neurons.

attractor-langchain

batchlabel

A Vaa3D plugin, can read batches of 3D block and images and their swc(optional), let users label them with different tags, and export a table. This is useful for generate training and testing dataset for machine learning and other big data research.

bloodglucosemldata

Publicly available datasets for blood glucose prediction. This public repository is intended to facilitate data import to projects.

ccf-db

ccf-db-backend

ccf-model-gen

Scripts for generating draco models based on CCFv3 annotation.

crystaltracer

fmcd-docker

Functional mouse connectome database for docker

gs-neuron-check

insitu

insitu-gmm-on-umap

Apply insitu Gaussian mixture model segmentation on umap results.

insitu-tools

A set of command line tools that find and compare In situ expression patterns between mRNA expression images.

interpretablescrna

itk-vtk-lib-lung-segment-demo

Medical Image Processing Coursework, BME, SEU

linlab_probe_pipeline

neuro-morpho-spectrum

Applying spectrum analysis methods on neuron morphology.

niend

order-independent-rendering-wrapper-on-threejs

A simple class that wraps your renderer and provide basic oit rendering for your opaque and transparent objects.

pbs-bash-v3d-app2

Scripts for APP2 auto-tracing on a PBS server

r3f-swc-viewer

Created with CodeSandbox

tc-project

A simple course assignment

teraqc

Whole Brain image quality check based on TeraConverted image blocks.

terastitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

the-littlest-jupyterhub

Simple JupyterHub distribution for 1-100 users on a single server

tip_label_widget

tracingalloy

traefik

The Cloud Native Edge Router

v3d_external

www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200

zfp148-peak-clustering