The latest development snapshot of the Mega2 code can be obtained from this Github repository. Please note that this development snapshot is not as thoroughly tested as our stable release version, but does contain the newest features and changes.
To obtain the stable release version, download the 'master' branch of this repository.
Please see the Mega2 documentation, which is available in this distribution as a PDF in the mega2_html folder:
mega2_html/Mega2_Documentation.pdf
It is also available online as html https://sites.pitt.edu/~weeks/docs/mega2_html/mega2.html and as a pdf https://sites.pitt.edu/~weeks/docs/mega2_html/Mega2_Documentation.pdf.
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The master branch reflects our latest working code; it may contain bugs.
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You can download source code for the stable release by clicking on 'Source' and then set the tag to the latest (highest) number, and then clicking the clone button.
