Generate a view for the seqspec.yaml file (https://github.com/IGVF/seqspec)
This will not work with files containing more than one hierarchy level. This will present a separate view for each modality (considering each modality a region) See 10xCRISPR_spec.yaml.
python seqspecview.py seqspec.yaml
python seqspecview.py 10xCRISPR_spec.yaml
Open render.html to see all the views
install
pip jinja2
pip yaml
pip pandasTODO
- improve the parser (parse the multi-dogmaseq spec)
- Remove duplicated regions
- show the hierarchy nodes
