Bioinformatician with an interest in high-throughput genomics and epigenomics. Experienced in R and C++.
Repositories
Shians/lupus_workflow
Shians/flexiplex
The Flexible Demultiplexer
Shians/shians
Shians/Bamurai
Shians/minimap2-ai-r
Shians/Nextflow-docs
AI-generated nextflow documentation for my own use
Shians/lupus-workflow-container
Shians/NanoMethViz
Shians/dorado_workflow
Shians/CellBench
R package for benchmarking single cell analysis methods
Shians/WEHI_RNASeq_Course_2025
Shians/cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
Shians/dorado-container
Shians/pears
A pipeline for finding fusions in single-cell RNA sequencing data
Shians/IdentifiHR
Shians/SpliceAI
A deep learning-based tool to identify splice variants
Shians/bioconda-recipes
Conda recipes for the bioconda channel.
Shians/BLAZE
SingleCell Nanopore sequencing data analysis
Shians/AlleleExpress
Shians/Rhdf5lib
Distribution of the HDF5 library in an R package
Shians/wf-human-variation
Shians/nextflow
A DSL for data-driven computational pipelines
Shians/GlimmaV2
interactive plots for differential expression analysis
Shians/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Shians/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
Shians/Glimma
Glimma R package
Shians/BiocFileCache
Manage Files Across Sessions
Shians/TestCIMacOS
Shians/BiocNeighbors
Clone of the Bioconductor repository for the BiocNeighbors package, see https://bioconductor.org/packages/devel/bioc/html/BiocNeighbors.html for the official development version.